Archive 2015-2006

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Archive 2015-2006

Archive 2015-2006

2015-2006 publication list

2015

  • Albuquerque, É.V.S., Bezerra, C.A., Romero, J.V., Valencia, J.W.A., Valencia-Jiménez, A., Pimenta, L.M., Barbosa, A.E.A.D., Silva, M.C.M., Meneguim, A.M., Sá, M.E.L., et al. (2015). Seed-Specific Stable Expression of the α-AI1 Inhibitor in Coffee Grains and the In Vivo Implications for the Development of the Coffee Berry Borer. Tropical Plant Biol. 1–10. DOI: 10.1007/s12042-015-9153-0
  • Baldacci-Cresp, F., MickaëlMaucourt, Deborde, C., Pierre, O., AnnickMoing, Brouquisse, R., Favery, B., and Frendo, P. Maturation of nematode-induced galls in Medicago truncatula is related to water status and primary metabolism modifications. Plant Science. DOI: 10.1016/j.plantsci.2014.12.01
  • Barbary, A., Djian-Caporalino, C., Palloix, A., and Castagnone-Sereno, P. (2015). Host genetic resistance to root-knot nematodes, Meloidogyne spp., in Solanaceae: from genes to the field. Pest. Manag. Sci. DOI: 10.1002/ps.4091
  • Cabrera, J., Díaz-Manzano, F.E., Barcala, M., Arganda-Carreras, I., de Almeida-Engler, J., Engler, G., Fenoll, C., and Escobar, C. (2015). Phenotyping nematode feeding sites: three-dimensional reconstruction and volumetric measurements of giant cells induced by root-knot nematodes in Arabidopsis. New Phytol. DOI: 10.1111/nph.13249
  • Castagnone-Sereno, P., Mulet, K., and Iachia, C. (2015). Tracking changes in life-history traits related to unnecessary virulence in a plant-parasitic nematode. Ecol Evol. DOI: 10.1002/ece3.1643
  • Engler, J. de A., Vieira, P., Rodiuc, N., Sa, M.F.G. de, and Engler, G. (2015). The plant cell cycle machinery: usurped and modulated by plant-parasitic nematodes. Advances in Botanical Research 73, 91–118.
  • Gauffre, B., Mallez, S., Chapuis, M.-P., Leblois, R., Litrico, I., Delaunay, S., and Badenhausser, I. (2015). Spatial heterogeneity in landscape structure influences dispersal and genetic structure: empirical evidence from a grasshopper in an agricultural landscape. Molecular Ecology24, 1713–1728. DOI: 10.1111/mec.13152
  • Ciordia, S., Robertson, L., Arcos, S.C., González, M.R., Mena, M. del C., Zamora, P., Vieira, P., Abrantes, I., Mota, M., Castagnone-Sereno, P., et al. (2015). Protein markers of Bursaphelenchus xylophilus Steiner & Buhrer, 1934 (Nickle, 1970) populations using quantitative proteomics and character compatibility. Proteomics. DOI: 10.1002/pmic.201500106
  • Lourenço-Tessutti, I.T., Souza Junior, J.D.A., Martins-de-Sa, D., Viana, A.A.B., Carneiro, R.M.D.G., Togawa, R.C., de Almeida-Engler, J., Batista, J.A.N., Silva, M.C.M., Fragoso, R.R., et al. (2015). Knock-Down of Heat-Shock Protein 90 and Isocitrate Lyase Gene Expression Reduced Root-Knot Nematode Reproduction. Phytopathology 105, 628–637. DOI: 10.1094/PHYTO-09-14-0237-R
  • Mallez, S., Castagnone, C., Espada, M., Vieira, P., Eisenback, J.D., Harrell, M., Mota, M., Aikawa, T., Akiba, M., Kosaka, H., et al. (2014). Worldwide invasion routes of the pinewood nematode: What can we infer from population genetics analyses? Biol Invasions 17, 1199–1213. DOI: 10.1007/s10530-014-0788-9
  • Truong, N.M., Nguyen, C.-N., Abad, P., Quentin, M., and Favery, B. (2015). Chapter Twelve - Function of Root-Knot Nematode Effectors and Their Targets in Plant Parasitism. In Advances in Botanical Research, C.E. and C. Fenoll, ed. (Academic Press), pp. 293–324.
  • Van Ghelder, C., Reid, A., Kenyon, D., and Esmenjaud, D. (2015). Detection of nepovirus vector and nonvector xiphinema species in grapevine. Methods Mol. Biol. 1302, 149–159. DOI: 10.1007/978-1-4939-2620-6_12
  • Van Ghelder, C., Reid, A., Kenyon, D., and Esmenjaud, D. (2015). Development of a real-time PCR method for the detection of the dagger nematodes Xiphinema index, X. diversicaudatum, X. vuittenezi and X. italiae, and for the quantification of X. index numbers. Plant Pathol 64, 489–500. DOI: 10.1111/ppa.12269
  • Vieira, P., and Engler, J. de A. (2015). The plant cell inhibitor KRP6 is involved in multinucleation and cytokinesis disruption in giant-feeding cells induced by root-knot nematodes. Plant Signaling & Behavior 10. DOI: 10.1080/15592324.2015.1010924

2014

  • Bernstein, A., Mangeon, A., Almeida-Engler, J., Engler, G., Montagu, M.V., Sachetto-Martins, G., and de Oliveira, D.E. (2014). Functional analysis of an auxin-inducible DNA-binding protein gene. Plant Signal Behav. DOI: 10.4161/15592324.2014.977706
  • Bird, D.M., Jones, J.T., Opperman, C.H., Kikuchi, T., and Danchin, E.G.J. (2014). Signatures of adaptation to plant parasitism in nematode genomes. Parasitology FirstView, 1–14.
     DOI:10.1017/S0031182013002163
  • Carneiro, R.M.D.G., Correa, V.R., Almeida, M.R.A., Gomes, A.C.M.M., Deimi, A.M., Castagnone-Sereno, P., and Karssen, G. (2014). Meloidogyne luci n. sp. (Nematoda: Meloidogynidae), a root-knot nematode parasitising different crops in Brazil, Chile and Iran. Nematology 16, 289–301. DOI: 10.1163/15685411-00002765
  • Castagnone-Sereno, P., and Danchin, E.G.J. (2014). Parasitic success without sex – the nematode experience. Journal of Evolutionary Biology. DOI: 10.1111/jeb.12337.
  • Correa, V.R., Mattos, V.S., Almeida, M.R.A., Santos, M.F.A., Tigano, M.S., Castagnone-Sereno, P., and Carneiro, R.M.D.G. (2014). Genetic diversity of the root-knot nematode Meloidogyne ethiopica and development of a species-specific SCAR marker for its diagnosis. Plant Pathol 63, 476–483. DOI: 10.1111/ppa.12108
  • Djian-Caporalino, C., Palloix, A., Fazari, A., Marteu, N., Barbary, A., Abad, P., Sage-Palloix, A.-M., Mateille, T., Risso, S., Lanza, R., et al. (2014). Pyramiding, alternating or mixing: comparative performances of deployment strategies of nematode resistance genes to promote plant resistance efficiency and durability. BMC Plant Biology 14, 53. DOI: 10.1186/1471-2229-14-53.
  • Eves-van den Akker S., Lilley, C.J., Danchin, E.G.J., Rancurel, C., Cock, P.J.A., Urwin, P.E., and Jones, J.T. (2014). The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes. Genome Biol Evol. DOI: 10.1093/gbe/evu171
  • Mouttet, R., Escobar-Gutiérrez, A., Esquibet, M., Gentzbittel, L., Mugniéry, D., Reignault, P., Sarniguet, C., and Castagnone-Sereno, P. (2014). Banning of methyl bromide for seed treatment: could Ditylenchus dipsaci again become a major threat to alfalfa production in Europe? Pest Manag. Sci. 70, 1017–1022. DOI: 10.1002/ps.3745
  • Nguyễn, P.V., Bellafiore, S., Petitot, A.-S., Haidar, R., Bak, A., Abed, A., Gantet, P., Mezzalira, I., Engler, J. de A., and Fernandez, D. (2014). Meloidogyne incognita - rice (Oryza sativa) interaction: a new model system to study plant–root-knot nematode interactions in monocotyledons. Rice 7, 1–13. DOI: 10.1186/s12284-014-0023-4.
  • Perfus-Barbeoch, L., Castagnone-Sereno, P., Reichelt, M., Fneich, S., Roquis, D., Pratx, L., Cosseau, C., Grunau, C., and Abad, P. (2014). Elucidating the molecular bases of epigenetic inheritance in non-model invertebrates: the case of the root-knot nematode Meloidogyne incognita. Frontiers in Physiology. 2014;5:211. Doi: 10.3389/fphys.2014.00211
  • Rodiuc, N., Vieira, P., Banora, M.Y., and de Almeida Engler, J. (2014). On the track of transfer cell formation by specialized plant-parasitic nematodes. Front Plant Sci 5, 160. DOI: 10.3389/fpls.2014.00160
  • Sapountzis, P., Duport, G., Balmand, S., Gaget, K., Jaubert-Possamai, S., Febvay, G., Charles, H., Rahbé, Y., Colella, S., and Calevro, F. New insight into the RNA interference response against cathepsin-L gene in the pea aphid, Acyrthosiphon pisum: molting or gut phenotypes specifically induced by injection or feeding treatments. Insect Biochemistry and Molecular Biology. DOI: 10.1016/j.ibmb.2014.05.005
  • Silva, E.H. da, Mattos, V. da S., Furlaneto, C., Giband, M., Barroso, P.A.V., Moita, A.W., Jorge-Junior, A., Correa, V.R., Castagnone-Sereno, P., and Carneiro, R.M.D.G. (2014). Genetic variability and virulence of Meloidogyne incognita populations from Brazil to resistant cotton genotypes. Eur J Plant Pathol 139, 195–204. DOI: 10.1007/s10658-014-0381-1
  • Veneault-Fourrey, C., Commun, C., Kohler, A., Morin, E., Balestrini, R., Plett, J., Danchin, E., Coutinho, P., Wiebenga, A., de Vries, R.P., et al. (2014). Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment. Fungal Genet. Biol. DOI:10.1016/j.fgb.2014.08.007
  • Vieira, P., Castagnone, C., Mallez, S., Espada, M., Navas, A., Mota, M., and Castagnone-Sereno, P. (2014). Sequence variability of the MspI satellite DNA family of the pinewood nematode Bursaphelenchus xylophilus at different geographic scales. Molecular Phylogenetics and Evolution 70, 120–129.
  • Vieira, P., Clercq, A.D., Stals, H., Leene, J.V., Slijke, E.V.D., Isterdael, G.V., Eeckhout, D., Persiau, G., Damme, D.V., Verkest, A., et al. (2014). The Cyclin-Dependent Kinase Inhibitor KRP6 Induces Mitosis and Impairs Cytokinesis in Giant Cells Induced by Plant-Parasitic Nematodes in Arabidopsis. Plant Cell tpc.114.126425. DOI: 10.1105/tpc.114.126425.
  • Wieczorek, K., El Ashry, A.E.N., Quentin, M., Grundler, F.M.W., Favery, B., Seifert, G.J., and Bohlmann, H. (2014). A distinct role of pectate lyases in the formation of feeding structures induced by cyst and root-knot nematodes. Mol. Plant Microbe Interact. DOI: 10.1094/MPMI-01-14-0005-R

2013

  • Antonino de Souza Junior, J.D., Ramos Coelho, R., Tristan Lourenco, I., da Rocha Fragoso, R., Barbosa Viana, A.A., Lima Pepino de Macedo, L., Mattar da Silva, M.C., Gomes Carneiro, R.M., Engler, G., de Almeida-Engler, J., et al. (2013). Knocking-Down Meloidogyne incognita Proteases by Plant-Delivered dsRNA Has Negative Pleiotropic Effect on Nematode Vigor. PLoS One. 2013; 8(12): e85364.Published online 2013 December 31. doi:  10.1371/journal.pone.0085364
  • Barbary, A., Palloix, A., Fazari, A., Marteu, N., Castagnone-Sereno, P., and Djian-Caporalino, C. The plant genetic background affects the efficiency of the pepper major nematode resistance genes Me1 and Me3. Theor Appl Genet 1–9. DOI:10.1007/s00122-013-2235-1
  • Bermond, G., Blin, A., Vercken, E., Ravigné, V., Rieux, A., Mallez, S., Morel-Journel, T., and Guillemaud, T. (2013). Estimation of the dispersal of a major pest of maize by cline analysis of a temporary contact zone between two invasive outbreaks. Mol Ecol. DOI: 10.1111/mec.12489.
  • Castagnone-Sereno P., Danchin E.G.J., Perfus-Barbeoch L. and Abad P. (2013). Diversity and evolution of root-knot nematodes, genusMeloidogyne: new insights from the genomic era. Annual Review of Phytopathology 51 : in press (doi: 10.1146/annurev-phyto-082712-102300).
  • Castro-Quezada, P., Aarrouf, J., Claverie, M., Favery, B., Mugniéry, D., Lefebvre, V., and Caromel, B. (2013). Identification of Reference Genes for Normalizing RNA Expression in Potato Roots Infected with Cyst Nematodes. Plant Mol Biol Rep 31, 936–945.
  • Correa, V.R., Santos, M.F.A. dos, Almeida, M.R.A., Peixoto, J.R., Castagnone-Sereno, P., and Carneiro, R.M.D.G. (2013). Species-specific DNA markers for identification of two root-knot nematodes of coffee: Meloidogyne arabicida and M. izalcoensis. Eur J Plant Pathol 137, 305–313. DOI: 10.1007/s10658-013-0242-3
  • Dalzell, J.J., McVeigh, P., Warnock, N.D., Mitreva, M., Bird, D.M., Abad, P., Fleming, C.C., Day, T.A., Mousley, A., Marks, N.J., et al. (2011). RNAi Effector Diversity in Nematodes. PLoS Negl Trop Dis 5, e1176.
  • Danchin, E.G.J., Arguel, M.-J., Campan-Fournier, A., Perfus-Barbeoch, L., Magliano, M., Rosso, M.-N., Da Rocha, M., Da Silva, C., Nottet, N., Labadie, K., et al. (2013). Identification of Novel Target Genes for Safer and More Specific Control of Root-Knot Nematodes from a Pan-Genome Mining. PLoS Pathog 9, e1003745. DOI: 10.1371/journal.ppat.1003745
  • De Almeida Engler, J., and Gheysen, G. (2013). Nematode-induced endoreduplication in plant host cells: why and how? Mol. Plant Microbe Interact. 26, 17–24.
  • Djian-Caporalino, C., Molinari, S., Palloix, A., Ciancio, A., Fazari, A., Marteu, N., Ris, N., and Castagnone-Sereno, P. The reproductive potential of the root-knot nematode Meloidogyne incognita is affected by selection for virulence against major resistance genes from tomato and pepper. European Journal of Plant Pathology 131, 431–440.
  • Duval, H., Hoerter, M., Polidori, J., Confolent, C., Masse, M., Moretti, A., Van Ghelder, C., and Esmenjaud, D. (2013). High-resolution mapping of the RMia gene for resistance to root-knot nematodes in peach. Tree Genetics & Genomes 1–10.
  • Esmenjaud D. et al.(2013) Characterization and choice of Xiphinema nematodes for breeding a stable resistance to fanleaf disease in grapevine. Innovations Agronomiques 27, 9–22.
  • Flot, J.-F., Hespeels, B., Li, X., Noel, B., Arkhipova, I., Danchin, E.G.J., Hejnol, A., Henrissat, B., Koszul, R., Aury, J.-M., et al. (2013). Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga. Nature. Doi: 10.1038/nature12326
  • Iberkleid, I., Vieira, P., de Almeida Engler, J., Firester, K., Spiegel, Y., and Horowitz, S.B. (2013). Fatty Acid-and Retinol-Binding Protein, Mj-FAR-1 Induces Tomato Host Susceptibility to Root-Knot Nematodes. PLoS ONE 8, e64586.
  • Jaouannet, M., Magliano, M., Arguel, M.J., Gourgues, M., Evangelisti, E., Abad, P., and Rosso, M.N. (2013). The root-knot nematode calreticulin Mi-CRT is a key effector in plant defense suppression. Mol. Plant Microbe Interact. 26, 97–105.
  • Jones, J.T., Haegeman, A., Danchin, E.G.J., Gaur, H.S., Helder, J., Jones, M.G.K., Kikuchi, T., Manzanilla-López, R., Palomares-Rius, J.E., Wesemael, W.M.L., et al. (2013). Top 10 plant-parasitic nematodes in molecular plant pathology. Molecular Plant Pathology n/a–n/a. doi:10.1111/mpp.12057
  • Khallouk, S., Voisin, R., Portier, U., Polidori, J., Van-Ghelder, C., and Esmenjaud, D. (2013). Multiyear evaluation of the durability of the resistance conferred by Ma and RMia genes to Meloidogyne incognita in Prunus under controlled conditions. Phytopathology. DOI:10.1094/PHYTO-09-12-0228-R
  • Kyndt, T., Vieira, P., Gheysen, G., and Almeida-Engler, J. de (2013). Nematode feeding sites: unique organs in plant roots. Planta 238, 807–818.
  • Laveau, C., Helden, M. van, Darrieutort, G., Esmenjaud, D., and Demangeat, G. (2013). First detection of Tomato black ring virus (TBRV) in a French vineyard. Journal International Des Sciences de La Vigne et Du Vin 47, 191–194.
  • Mallez S., Castagnone C., Espada M., Vieira P., Eisenback J.D., Mota M., Guillemaud T. and Castagnone-Sereno P. (2013). First insights into the genetic diversity of the pinewood nematode in its native area using new polymorphic microsatellite loci.PLoS ONE 8 : e59165.
  • Meštrović, N., Pavlek, M., Car, A., Castagnone-Sereno, P., Abad, P., and Plohl, M. (2013). Conserved DNA Motifs, Including the CENP-B Box-like, Are Possible Promoters of Satellite DNA Array Rearrangements in Nematodes. PLoS ONE 8, e67328.
  • Quentin, M., Abad, P. and Favery, B. (2013). Plant parasitic nematode effectors target host defense and nuclear functions to establish feeding cells.Front. Plant Sci.4, 53
  • Vieira, P., Escudero, C., Rodiuc, N., Boruc, J., Russinova, E., Glab, N., Mota, M., De Veylder, L., Abad, P., Engler, G., et al. (2013). Ectopic expression of Kip-related proteins restrains root-knot nematode-feeding site expansion. New Phytol.
  • Vieira, P., Kyndt, T., Gheysen, G., and de Almeida Engler, J. (2013). An insight into critical endocycle genes for plant-parasitic nematode feeding sites establishment. Plant Signal Behav 8, e24223.

2012

  • Arguel M.J., Jaouannet M., Magliano M., Abad P., Rosso M.N. (2012). siRNAs trigger efficient silencing of a parasitism gene in plant parasitic root-knot nematodes. Genes, 3: 391-408.
  • Arias MC, Danchin EGJ, Coutinho PM, Henrissat B, Ball S. (2012) Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants. Mobile Genetic Elements 1;2(2):81-87.
  • Castagnone-Sereno P. (2012). Meloidogyne enterolobii (= M. mayaguensis) : profile of an emerging, highly pathogenic root-knot nematode species. Nematology 14 : 133-138.
  • Coutard, B., Danchin, E.G.J., Oubelaid, R., Canard, B., and Bignon, C. (2012). Single pH buffer refolding screen for protein from inclusion bodies. Protein Expr. Purif. 82, 352–359.
  • Damiani, I., Baldacci-Cresp, F., Hopkins, J., Andrio, E., Balzergue, S., Lecomte, P., Puppo, A., Abad, P., Favery*, B. and Hérouart*, D (co-corresponding authors) (2012). Plant Genes Involved in Harbouring Symbiotic Rhizobia or Pathogenic Nematode. New Phytologist, 194: 511–522.
  • Danchin E.G.J, Rosso MN. (2012) Lateral gene transfers have polished animal genomes: lessons from Nematodes. Frontiers in Cellular and Infectious Microbiology 2:27. doi: 10.3389/fcimb.2012.00027.
  • de Almeida Engler, J., Kyndt, T., Vieira, P., Van Cappelle, E., Bouldolf, V., Sanchez, V., Escobar, C., De Veylder, L., Engler, G., Abad, P., Gheysen, G. (2012)CCS52andDEL1genes are key components of the endocycle in nematode induced feeding sites. The Plant Journal,72: 185-198.
  • Djian-Caporalino C., 2012. Root-knot nematodes (Meloidogyne spp.), a growing problem in French vegetable crops. EPPO Bulletin (Bulletin OEPP- Revue des aspects réglementaires de la protection des végétaux - Organisation Européenne et Méditerranéenne pour la protection des plantes) 42 (1): 127-137.
  • Fabien Baldacci-Cresp, F., Chang, C., Maucourt, M., Deborde, C., Hopkins, J., Lecomte, P., Brouquisse, R., Moing, A., Abad, P., Hérouart, D., Puppo, A., Favery, B. and Frendo, P. (2012). (Homo)glutathione Deficiency Impairs Root-knot NematodeDevelopment inMedicago truncatula.PLoS Pathogens8(1): e1002471.
  • Fazari A., Palloix A., Wang L.H., Hua M.Y., Sage-Palloix A.M., Zhang B.X., Djian-Caporalino C., 2012. The root-knot nematode resistance N-gene co-localizes in the Me-genes cluster on the pepper (Capsicum annuum L.) P9 chromosome. Plant Breeding 131, 665-673 (DOI 10.1111/j.1439-0523.2012.01994.x).
  • Jaouannet M, Perfus-Barbeoch L, Deleury E, Magliano M, Engler G, Vieira P, Danchin EGJ, Da Rocha M, Coquillard P, Abad P, Rosso MN. (2012) A root-knot nematode secreted protein is injected into giant-cells and targeted to the nuclei. New Phytologist 194(4):924-31.
  • Paganini J, Campan-Fournier A, Da Rocha M, Gouret P, Pontarotti P, Wajnberg E, Abad P, Danchin EGJ. (2012) Contribution of Lateral Gene Transfers to the Genome Composition and Parasitic Ability of Root-Knot Nematodes. PLoS One 7(11):e50875
  • Santos, M.F.A. dos, Furlanetto, C., Almeida, M.R.A., Carneiro, M.D.G., Mota, F.C., Gomes, A.C.M.M., Silveira, N.O.R., Silva, J.G.P., Castagnone-Sereno, P., Tigano, M.S., et al. (2012). Biometrical, biological, biochemical and molecular characteristics of Meloidogyne incognita isolates and related species. Eur J Plant Pathol 134, 671–684.
  • Tomalova I., Iachia C., Mulet K. and Castagnone-Sereno P. (2012). The map-1 gene family in root-knot nematodes, Meloidogyne spp. : a set of taxonomically restricted genes specific to clonal species. PLoS One 7 : e38656.
  • Vieira P., Banora M.Y., Castagnone-Sereno P., Rosso M.N., Engler G. and de Almeida-Engler J. (2012). An immunocytochemical procedure for protein localization in nematode pre-parasitic and parasitic stages using methylacrylate-embedded tissues. Phytopathology 102 : 990-996.
  • Vieira, P., Engler, G. & de Almeida Engler, J. (2012). Whole-mount confocal imaging of nuclei in giant feeding-cells induced by root-knot nematodes inArabidopsis. New Phytologist  195: 488-496.
  • Villate, L., Morin, L., Demangeat, G., Van Helden, M., and Esmenjaud, D. 2012. Control of Xiphinema index populations by fallow plants under greenhouse and field conditions. Phytopathology 102: 627-634.

2011

  • Amselem J, Cuomo CA, van Kan JA, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S, Fournier E, Gout L, Hahn M, Kohn L, Lapalu N, Plummer KM, Pradier JM, Quévillon E, Sharon A, Simon A, Ten Have A, Tudzynski B, Tudzynski P, Wincker P, Andrew M, Anthouard V, Beever RE, Beffa R, Benoit I, Bouzid O, Brault B, Chen Z, Choquer M, Collémare J, Cotton P, Danchin EG, Da Silva C, Gautier A, Giraud C, Giraud T, Gonzalez C, Grossetete S, Güldener U, Henrissat B, Howlett BJ, Kodira C, Kretschmer M, Lappartient A, Leroch M, Levis C, Mauceli E, Neuvéglise C, Oeser B, Pearson M, Poulain J, Poussereau N, Quesneville H, Rascle C, Schumacher J, Ségurens B, Sexton A, Silva E, Sirven C, Soanes DM, Talbot NJ, Templeton M, Yandava C, Yarden O, Zeng Q, Rollins JA, Lebrun MH, Dickman M. (2011) Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLoS Genetics (8):e1002230
  • Bosselut N, Van Ghelder C, Claverie M, Voisin R, Onesto JP, Rosso MN, Esmenjaud D. 2011.Agrobacterium rhizogenes-mediated transformation ofPrunus as an alternative for gene functional analysis in hairy-roots and composite plants. Plant Cell Rep 30:1313-1326. 
  • Castagnone-Sereno P., Deleury E., Perfus-Barbeoch L., Danchin E.G.J., Abad P. Data-mining of the Meloidogyne incognita degradome and comparative analysis of proteases in nematode. Genomics 2011; Jan;97(1):29-36
  • Danchin E.G.J. What Nematode genomes tell us about the importance of horizontal gene transfers in the evolutionary history of animals ? Mobile Genetic Elements 2011 Nov/Dec 1(4):1-5
  • Haegeman A., Jones J., Danchin E.G.J. Horizontal gene transfer in nematodes: a catalyst for plant parasitism? Molecular Plant Microbe Interaction 2011 Aug;24(8):879-87
  • Hok S., Danchin E.G.J., Allasia V., Panabières F., Attard A., Keller H. An Arabidopsis (malectin-like) leucine-rich repeat receptor-like kinase contributes to downy mildew disease. (2011) Plant, Cell & Environment doi: 10.1111/j.1365-3040.2011.02390.x.
  • Khallouk, S., Voisin, R., Van Ghelder, C., Engler, G., Amiri, S.,Esmenjaud, D.2011. Histological mechanism of the resistance conferred by the Magene against Meloidogyne incognita in Prunus. Phytopathology 101: 945-951.
  • Souza, D.D.S. de L. e, de Souza, J.D.A., Jr, Grossi-de-Sá, M., Rocha, T.L., Fragoso, R. da R., Barbosa, A.E.A. de D., de Oliveira, G.R., Nakasu, E.Y.T., de Sousa, B.A., Pires, N.F., et al. (2011). Ectopic expression of a Meloidogyne incognita dorsal gland protein in tobacco accelerates the formation of the nematode feeding site. Plant Sci. 180, 276–282.
  • Vens C., Rosso MN., Danchin E.G.J. Identifying discriminative classification-based motifs in biological sequences. Bioinformatics 2011; 27 (9): 1231-1238.(View Online)
  • Vieira P., Danchin E.G.J., Neveu C., Crozat C., Jaubert S., Hussey R.S., Engler G., Abad P., de Almeida-Engler J., Castagnone-Sereno P., Rosso M.N. The plant apoplasm is an important recipient compartment for nematode secreted proteins . Journal of Experimental Botany 2011 Jan;62(3):1241-5

2010

  • Abad, P., Williamson, V.M. (2010). Plant nematode interaction: a sophisticated dialogue. Advances in Botanical Research, 53: 147-192.
  • Barcala, M., Garcia, A., Cabrera, J., Casson, S., Lindsey, K., Favery, B., Garcia-Casado, G., Solano, R., Fenoll, C., Escobar, C. (2010). Early transcriptomic events in microdissected Arabidopsis nematode-induced giant cells. Plant Journal, 61: 698-712.
  • Castagnone-Sereno P, Danchin E.G.J., Deleury E, Guillemaud T, Malausa T, Abad P. Genome-wide survey and analysis of microsatellites in nematodes, with a focus on the plant-parasitic species Meloidogyne incognita. BMC Genomics. 2010 Oct 25; 11:598.
  • Danchin E.G.J., Rosso M-N., Vieira P., de Almeida-Engler J., Coutinho P, Henrissat B., Abad P. (2010). Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes. PNAS 2010; Oct 12;107(41):17651-6. (Open access)
  • de Almeida Engler J., Rodiuc N., Smertenko A., Abad P. (2010). Plant actin cytoskeleton re-modelling by plant parasitic nematodes. Plant Signaling & Behavior 5:3, 1-5; March, 2010.
  • Demangeat, G, Komar, V., Van-Ghelder, C., Voisin, R., Lemaire, O., Esmenjaud, D., Fuchs, M. (2010). Transmission competency of single-femaleXiphinema index lines for Grapevine fanleaf virus. Phytopathology 100:384-389.
  • Esmenjaud, D., Van Ghelder, C., Voisin, R., Bordenave, L., Decroocq, S., Bouquet, A., Ollat, N. (2010). Host suitability of Vitis andVitis-Muscadinia material to the nematode Xiphinema index over 1 to 4 years. American Journal of Enology & Viticulture (US) 61: 96-101.
  • Gutierrez-Gutierrez, C., Palomares-Rius, J.E., Cantalapiedra-Navarrete, C., Landa, B.B., Esmenjaud, D. and Castillo, P. 2010. Molecular analysis and comparative morphology to resolve a complex of cryptic Xiphinema species. Zoologica Scripta 39: 483–498.
  • Hofmann J., Youssef Banora M., de Almeida-Engler J., Grundler, FMW. (2010). The role of callose deposition along plasmodesmata in nematode feeding sites. Co-last authorship. MPMI, 23: 549-557.
  • Ma L., van der Does C., Borkovich K.A., Coleman J.J., ... , Danchin E.G.J., ... , Galagan J., Cuomo C.A., Kistler H.C., Rep M. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature 2010; Mar 18;464(7287):367-73. (View Online)
  • Malausa T., Gilles A, Meglécz E., Blanquart H., Duthoy S., Costedoat C., Dubut V., Pech N., Castagnone-Sereno P., Délye C., Feau N., Frey P., Gauthier P., Guillemaud T., Hazard L., Le Corre V., Lung-Escarmant B., Malé P.J.G., Ferreira S. and Martin J.F. (2011). High-throughput microsatellite isolation with 454 GS-FLX pyrosequencing. Molecular Ecology Resources 11: 638-644.
  • Marino D., Andrio E., Danchin E.G.J., Oger E., Gucciardo S., Lambert A., Puppo A., Pauly N. 2010. A Medicago truncatula NADPH oxidase is involved in symbiotic nodule functioning. New Phytologist, in press.
  • Marmonier, A.,, Schellenberger, P., Esmenjaud, D., Schmitt-Keichinger, C., Ritzenthaler, C., Andret-Link, P., Lemaire, O., Fuchs, M. and Demangeat, G. 2010. The coat protein determines the specificity of virus transmission by Xiphinema diversicaudatum. Journal of Plant Pathology 92: 275-279.
  • Tigano M., de Siqueira K., Castagnone-Sereno P., Mulet K., Queiroz P., dos Santos M., Almeida M., Silva J. and Carneiro R. (2010). Genetic diversity of the root-knot nematode Meloidogyne enterolobii and development of a SCAR marker for this guava-damaging species. Plant Pathology : sous presse (Doi: 10.1111/j.1365-3059.2010.02350.x)
  • Van Ghelder, C., Lafargue, B., Dirlewanger, E., Ouassa, A., Voisin, R., Polidori, J., Kleinhentz, M., Esmenjaud, D. (2010). Characterization of theRMja gene for resistance to the root-knot nematodes in almond: spectrum, location and interest for Prunus breeding. Tree Genetics and Genomes(in press).
  • Villate, L., Esmenjaud, D., Van Helden M., Stoeckel, S., Plantard O. (2010). Genetic signature of amphimixis allows for the detection and fine scale localization of sexual reproduction events in a mainly parthenogenetic nematode. Molecular Ecology 19: 856–873.
  • Vitale S., Santori A., Wajnberg E., Castagnone-Sereno P., Luongo L. and Belisario A. (2011). Morphological and molecular analysis of Fusarium lateritium, the cause of grey necrosis on hazelnut fruit in Italy. Phytopathology 101: 679-686.

2009

  • Bird, D.M., Williamson, V.M., Abad, P., McCarter, J., Danchin, E.G.J., Castagnone-Sereno, P., Opperman, C.H. (2009). The Genomes of Root-Knot Nematodes. Annual Review of Phytopathology, 47: 333-351.
  • Caillaud, M.-C., Paganelli, L., Lecomte, P., Deslandes, L., Quentin, M., Pecrix, Y., Le Bris, M., Marfaing, N., Abad, P., Favery, B. (2009).Spindle assembly checkpoint protein dynamics reveal conserved and unsuspected roles in plant cell division. PLoS One, 4: e6757.
  • Castagnone-Sereno, P., Semblat, J.P., Castagnone, C. (2009). Modular architecture and evolution of the map-1 gene family in the root-knot nematode Meloidogyne incognita. Molecular Genetics and Genomics, 282: 547-554.
  • Clement, M., Ketelaar, T., Rodiuc, N., Banora, M.Y., Smertenko, A., Engler, G., Abad, P., Hussey, P.J., de Almeida Engler, J. (2009). Actin-Depolymerizing Factor2-Mediated Actin Dynamics Are Essential for Root-Knot Nematode Infection of Arabidopsis. Plant Cell, 21: 2963-2979.
  • Coleman J.J, Rounsley S.D, Rodriguez-Carres M, Kuo A, ... , Danchin EGJ, Henrissat B, Coutinho P.M, ... , Covert S.F, Temporini E,  VanEtten H.D. The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion. Plos Genetics. 2009, Aug;5(8):e1000618.
  • Dubreuil, G., Magliano, M., Dubrana, M.P., Lozano, J., Lecomte, P., Favery, B., Abad, P., Rosso, M.N. (2009). Tobacco rattle virus mediates gene silencing in a plant parasitic root-knot nematode. Journal of Experimental Botany, 60: 4041-4050.
  • Esmenjaud, D., Voisin, R., Van Ghelder, C., Bosselut, N., Lafargue, B., Di Vito, M., Dirlewanger, E., Poessel, J.L., Kleinhentz, M. (2009). Genetic dissection of resistance to root-knot nematodes Meloidogyne spp. in plum, peach, almond, and apricot from various segregating interspecificPrunus progenies. Tree Genetics & Genomes, 5: 279-289.
  • Lopez-Rascol V, Levasseur A, Chabrol O, Gruseas S, Gouret P, Danchin EGJ, Pontarotti P. CASSIOPE: an expert system for conserved regions searches. BMC Bioinformatics. 2009 Sep 10;10(1):284.
  • Mestrovic, N., Plohl, M., Castagnone-Sereno, P. (2009). Relevance of satellite DNA genomic distribution in phylogenetic analysis: A case study with root-knot nematodes of the genus Meloidogyne. Molecular Phylogenetics and Evolution, 50: 204-208.
  • Quentin, M., Allasia, V., Pegard, A., Allais, F., Ducrot, P.H., Favery, B., Levis, C., Martinet, S., Masur, C., Ponchet, M., Roby, D., Schlaich, N.L., Jouanin, L., Keller, H. (2009). Imbalanced Lignin Biosynthesis Promotes the Sexual Reproduction of Homothallic Oomycete Pathogens. PLoS Pathogens (US), 5:e1000264.
  • Randig, O., Deau, F., dos Santos, M.F.A., Tigano, M.S., Carneiro, R., Castagnone-Sereno, P. (2009). A novel species-specific satellite DNA family in the invasive root-knot nematode Meloidogyne mayaguensis and its potential use for diagnostics. European Journal of Plant Pathology, 125: 485-495.
  • Rosso, M.N., Jones, J.T., Abad, P. (2009). RNAi and Functional Genomics in Plant Parasitic Nematodes. Annual Review of Phytopathology,47: 207-232.
  • Villate, L., Esmenjaud, D., Coedel, S., Plantard, O. (2009). Development of nine polymorphic microsatellite markers for the phytoparasitic nematode Xiphinema index, the vector of the Grapevine fanleaf virus. Molecular Ecology Resources, 9: 229-232.

2008

  • Abad, P., Gouzy, J., Aury, J.-M., Castagnone-Sereno, P., Danchin, E.G.J., Deleury, E., Perfus-Barbeoch, L., Anthouard, V., Artiguenave, F., Blok, V.C., Caillaud, M.C., Coutinho, P.M., Dasilva, C., De Luca, F., Deau, F., Esquibet, M., Flutre, T., Goldstone, J.V., Hamamouch, N., Hewezi, T., Jaillon, O., Jubin, C., Leonetti, P., Magliano, M., Maier, T.R., Markov, G.V., McVeigh, P., Pesole, G., Poulain, J., Robinson-Rechavi, M., Sallet, E., Segurens, B., Steinbach, D., Tytgat, T., Ugarte, E., van Ghelder, C., Veronico, P., Baum, T.J., Blaxter, M., Bleve-Zacheo, T., Davis, E.L., Ewbank, J.J., Favery, B., Grenier, E., Henrissat, B., Jones, J.T., Laudet, V., Maule, A.G., Quesneville, H., Rosso, M.N., Schiex, T., Smant, G., Weissenbach, J., and Wincker, P., (2008). Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology (US), 26: 909-915.
  • Bellafiore, S., Zhouxin, S., Rosso, M.N., Abad, P., Shih, P., and Briggs, S.P. (2008). Direct identification of the Meloidogyne incognita secretome reveals proteins with host cell reprogramming potential. PLoS Pathogens (US), 4: e1000192.
  • Caillaud, M.C., Abad, P. and Favery, B. (2008). Cytoskeleton Reorganization, a Key Process In Root-Knot Nematode-Induced Giant Cell Ontogenesis. Plant Signaling & Behavior, 3: 816–818.
  • Caillaud, M.C., Dubreuil, G., Quentin, M., Perfus-Barbeoch, L., Lecomte, P., Engler, J.D., Abad, P., Rosso, M.N., and Favery, B. (2008). Root-knot nematodes manipulate plant cell functions during a compatible interaction. Journal of Plant Physiology (DE), 165: 104-113.
  • Caillaud, M.C., Lecomte, P., Jammes, F., Quentin, M., Pagnotta, S., Andrio, E., Engler, J.D., Marfaing, N., Gounon, P., Abad, P., and Favery, B. (2008).. MAP65-3 microtubule-associated protein is essential for nematode-induced giant cell ontogenesis in Arabidopsis. Plant Cell (US), 20: 423-437.
  • Darbo E, Danchin EGJ, Mc Dermott MF, Pontarotti P. Evolution of major histocompatibility complex by "en bloc" duplication before mammalian radiation. Immunogenetics. 2008 June 17.
  • Espagne E, Lespinet O, Malagnac F, ... , de Vries RP, Battaglia E, Coutinho PM, Danchin EGJ, Henrissat B, ... , Debuchy R, Wincker P, Weissenbach J, Silar P. The genome sequence of the model ascomycete fungus Podospora anserina. Genome Biology 2008 May 6;9(5):R77.
  • Martin F, Aerts A, Ahrén D, Brun A, Danchin E.G.J,...,Coutinho P.M,..., Henrissat B,...,Tuskan G & Grigoriev I. V. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature 2008, Mar 6;452(7183):88-92.
  • Martinez D, Berka RM, Henrissat B, Saloheimo M, ... , Coutinho PM, Cullen D, Danchin EGJ, Grigoriev IV, ... , Rokhsar DS, Lucas SM, Rubin EM, Dunn-Coleman N, Ward M, Brettin TS. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nature Biotechnology 2008, May;26(5):553-60.
  • Muniz, M.d.F.S., Campos, V.P., Castagnone-Sereno, P., Cunha e Castro, J.M.d., Almeida, M.R.A., Carneiro, R.M.D.G. (2008). Diversity ofMeloidogyne exigua (Tylenchida: Meloidogynidae) populations from coffee and rubber tree. Nematology (NL), 10: 897-910.
  • Villate, L., Fievet, V., Hanse, B., Delemarre, F., Plantard, O., Esmenjaud, D., van Helden, M. (2008). Spatial distribution of the Dagger nematodeXiphinema index and its associated Grapevine fanleaf virus in French vineyard. Phytopathology (US), 98: 942-948.

2007

  • Benoit I, Danchin E.G.J, Bleichrodt R.J., de Vries R.P. Biotechnological applications and potential of fungal feruloyl esterases based on prevalence, classification and biochemical diversity. Biotechnology Letters 2007;30(3):387-96.
  • Bleve-Zacheo, T., Melillo, M.T., Castagnone-Sereno, P. (2007) The contribution of biotechnology to root-knot nematode control in tomato plants.Pest Technology, 1 (1) : 1-16.
  • Castagnone-Sereno, P., Bongiovanni, M., Wajnberg, E. (2007) Selection and parasite evolution: a reproductive fitness cost associated with virulence in the parthenogenetic nematode Meloidogyne incognita. Evolutionary Ecology, 21 (2) : 259-270.
  • Da Lage J-L, Danchin E.G.J, Casane D. Where do animal alpha-amylases come from? An interkingdom trip. FEBS Letters 2007; 581(21):3927-35.
  • Djian-Caporalino, C., Fazari, A., Arguel, M.J., Vernie, T., Van de Casteele, C., Faure, I., Brunoud, G., Pijarowski, L., Palloix, A., Lefebvre, V., Abad, P. (2007) Root-knot nematode (Meloidogyne spp.) Me resistance genes in pepper (Capsicum annuum L.) are clustered on the P9 chromosome. Theoretical and Applied Genetics, 114 (3) : 473-486.
  • Dubreuil, G., Magliano, M., Deleury, E., Abad, P., Rosso, M.N. (2007) Transcriptome analysis of root-knot nematode functions induced in the early stages of parasitism. New Phytologist, 176 (2) : 426-436.
  • François, C., Castagnone, C., Boonham, N., Tomlison, J., Lawson, R., Quill, J., Vieira, P., Mota, M., Castagnone-Sereno, P. (2007) Satellite DNA as a target for TaqMan real-time PCR detection of the pinewood nematode, Bursaphelenchus xylophilus. Molecular Plant Pathology, 8 (6) : 803-809.
  • Levasseur A, Orlando L, Bailly X, Milinkovitch M.C, Danchin E.G.J, Pontarotti P. Conceptual bases for quantifying the role of environmental changes on gene evolution: the participation of positive selection and neutral evolution. Biological Reviews 2007;82(4):551-72.
  • Neveu, C., Charvet, C., Fauvin, A., Castagnone-Sereno, P., Cabaret, J. (2007) Identification of levamisole resistance markers in the parasitic nematode Haemonchus contortus using a cDNA-AFLP approach. Parasitology, 134 : 1105-1110.
  • Pel H.J., de Winde J.H.,..., Coutinho P.M, Danchin E.G.J.,..., Henrissat B,..., Visser J., Stam H. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Natura Biotechnology 2007; 25(2):221-231.

2006

  • Castagnone-Sereno, P. (2006) Genetic variability and adaptive evolution in parthenogenetic root-knot nematodes. Heredity, 96 (4) : 282-289.
  • Francois, C. , Kebdani, N., Barker, I., Tomlinson, J., Boonham, N., Castagnone-Sereno, P. (2006) Towards specific diagnosis of plant-parasitic nematodes using DNA oligonucleotide microarray technology: A case study with the quarantine species Meloidogyne chitwoodi. Molecular and Cellular Probes, 20 (1) : 64-69.
  • Ledger, T. N., Jaubert, S., Bosselut, N., Abad, P., Rosso, M. N. (2006) Characterization of a new beta-1,4-endoglucanase gene from the root-knot nematode Meloidogyne incognita and evolutionary scheme for phytonematode family 5 glycosyl hydrolases. Gene, 382 : 121-128.
  • Melillo, M.T., Leonetti, P., Bongiovanni, M., Castagnone-Sereno, P., Bleve-Zacheo, T. (2006) Modulation of reactive oxygen species activities and H2O2 accumulation during compatible and incompatible tomato-root-knot nematode interactions. New Phytologist, 170 (3) : 501-512.
  • Mestrovic, N., Castagnone-Sereno, P., Plohl, M. (2006) High conservation of the differentially amplified MPA2 satellite DNA family in parthenogenetic root-knot nematodes. Gene, 376 (2) : 260-267.
  • Mestrovic, N., Castagnone-Sereno, P., Plohl, M. (2006) Interplay of selective pressure and stochastic events directs evolution of the MEL172 satellite DNA library in root-knot nematodes. Molecular Biology and Evolution, 23 (12) : 2316-2325.

Modification date : 13 September 2023 | Publication date : 22 June 2015 | Redactor : pchavigny