Séminaire scientifique

DiCoExpress, an R tool for biologists to analyze RNAseq projects.

DiCoExpress, an R tool for biologists to analyze RNAseq projects: from quality control to coexpression with gene enrichment studies.

10 February 2023

Sophia Antipolis - INRAE PACA - A010 - Video conferencing

As part of the scientific animation ISA which will take place on Friday, February 10, 2023 at 14H, the guest of the team SYMBIOSE, Marie-Laure Martin, Researcher at IPS2 and MIA Paris-Saclay, will present her work:

Abstract :

DiCoExpress is a set of scripts implemented in R that use pre-existing R packages. It allows to perform quality control, differential analysis and co-expression analysis of RNAseq data. In addition, the lists of differentially expressed genes and the identified co-expression clusters are subjected to an annotation enrichment analysis. DiCoExpress has been designed to be used by biologists with rudimentary knowledge of R. The objective of this seminar is to present this tool and to illustrate its use by a project studying the systemic response of M. truncatula roots when they are subjected to abiotic stress.

This seminar will also be held via videoconference.
Participate in the Zoom meeting:
https://univ-cotedazur.zoom.us/j/85627272497?pwd=L04rU3VSQzJRV24yL0Q4Y2h6Q0s4QT09

Meeting ID : 856 2727 2497
Secret code: 329237
To connect from a landline phone:
1. Dial +33 1 8699 5831
2. Enter the ID 856 2727 2497 then #.
3. Enter the code 329237 then #.

Contact: changeMe@inrae.fr

Modification date : 21 September 2023 | Publication date : 13 September 2023